Application deadline passed – more information coming soon

Recruitment

Applications are invited for 11 fully funded PhD positions in the NanoRAM Doctoral Network.

Join one of Europe’s leading research laboratories and become part of the new generation of researchers working with nanotools in soft matter research.

NanoRAM is currently offering 11 PhD fellowships. Read about the requirements and how to apply here.

Main application deadline (2024.04.01) passed.

Applications for doctoral position at KIT are still welcomed.

Eligibility Requirements

Prospective candidates must comply with the following:

  • Mobility rule: The candidate must not have resided or carried out their main activity (work, studies, etc.) in the country of the recruiting beneficiary for more than 12 months in the 3 years immediately before the recruitment date.
  • The candidate must be a doctoral candidate, i.e. not already in possession of a doctoral degree at the date of the recruitment.
  • The candidate must fulfil the requirements to be able to enrol in a doctoral programme at the hosting institution/country, and, if applicable, the specific eligibility requirements at the hosting institutions.
How to Apply

Apply for one or up to three of the available positions through the joint application process by sending the information described below to nanoram@au.dk before the application deadline 1st April 2024 (for positions DC1, DC2, DC3, DC4, DC5, DC9, DC11 and DC13)*. Attachments must be PDF files. Please include “Application [your name]” in the subject line.

  • Personal information: Full name, gender, nationality and contact details.
  • Which doctoral projects you are applying for: Please clearly state the project numbers and your priority list (e.g.: Priority 1: DC1, priority 2: DC3, priority 3: DC5).
  • Motivation letter: Maximum 2 pages highlighting your academic and research experience as well as why you are interested in NanoRAM and the specific projects.
  • Curriculum vitae: Maximum 3 pages.
  • Academic records: Certified documents with grades. If the candidate has not yet completed the required degree, the documents must show the expected graduation date.
  • Recommendation letters: From university lecturer, scientist or similar, who can verify your academic work and judge your potential as a predoctoral researcher. Contact information for the referee must be included as they will be contacted during the evaluation process.

* Applications to the positions DC6, DC10 and DC12 must be submitted directly to the hosting institution graduate school. A link is provided in the respective project descriptions at the bottom of the page.

Selection process

The NanoRAM application and assessment process will follow the following steps:

1st April 2024: Deadline for applications. Applications submitted after this date might not be included in the evaluation process.

2-15 April 2024: Screening and evaluation: The NanoRAM management office will verify that the applications comply with the Eligibility Requirements. Each application will then be assessed independently by at least two of the principal investigators.

16-30 April 2024: Interviews: Selected candidates will be invited for an online interview attended by one or more of the prospective supervisors.

May 2024: Notification of selection outcome: All candidates will be informed of the application outcome, and the selected candidates will be instructed in how to apply with the hosting institution graduate school.

June-October 2024: Expected start date. Candidates must have completed the required degree before end October.

About the positions

The PhD positions follow local rules. The length is 3 years for most countries and 4 years for Sweden and Austria.
The exact PhD salary will be confirmed upon appointment and includes a living allowance (€40.800/year *(correction factor to be applied per country)), a mobility allowance (€600), and a family allowance.

The candidate will benefit from secondments to other partners in the consortium for up to 12 months.

DC1

Aarhus University

Project title:

Pipette based scanning probe microscopy

Supervisor:


Project description

Objective:

Micro- and nano pipettes are powerful and versatile sensing tools used for single-molecule detection, monitoring processes in biological systems, and as scanning probes for studying surface properties with nanoscale resolution. In this project, we are interested in the development of new nanoscience methodology, especially by investigating the image formation mechanism of scanning ion-conductance microscopy and by formulating new imaging routines that allow functional surface characterisation on the nanoscale.
Potential research directions include: finite element simulations for a better fundamental understanding of image formation; characterisation of charge density in lipid membranes and live cells; studying ion diffusion in the porous structure of hydrogels.

Qualifications:

We are looking for a motivated candidate with a master’s degree (or an equivalent university degree) within Applied Physics, Nanoscience, Materials Science or similar.
Previous experience with scanning probe microscopy is highly welcomed but not a prerequisite. Expertise in electrochemistry, cell culture and finite element modelling are also of value.

DC2

Consejo Superior de Investigaciones Científicas

Project title:

Fast nanomechanical spectroscopy for soft matter

Supervisor:


Project description

Objective:

The objective of the project is to develop and optimize a high-speed nanoscale mechanical property mapping of soft matter in their native condition. Soft matter involves a wide variety of materials ranging from polymer blends, biomolecules and live cells. The results of the project will have implications in different societal challenges such as energy storage, sustainability and health. The project will involve AFM methods, artificial intelligence, instrumentation and materials preparation.

Qualifications:

Graduate studies in Physics or Engineering (mechanical, materials or related).

DC3

Aarhus University

Project title:

3D mechanical stimulation for studying mechanotransduction of MSCs in a hydrogel

Supervisor:


Project description

Objective:

We seek a highly motivated PhD candidate to work with the development of multi-modal cell stimuli systems. The objective of the project is to develop a unique system that can realise mechanical, electrical and biochemical cell stimuli, while deciphering the role of different factors such as the mechanics, porosity, chemical composition, presence of integrin binding sites and viscoelastic properties of the scaffold in dictating the stem cell differentiation. Potential research directions include: development of a novel piezoelectric cellulose nanocrystal system for cell mechanotransduction; establishing advanced sensing, measurement, actuation and control methodologies for precision mechanical stimulation and characterisation; development of a picobalance based on a photothermally excited cantilever to link cell mass to cellular state and morphology.

Qualifications:

  • Master or equivalent in biotechnology, biomedicine, molecular biology, nanotechnology or materials science.
  • Good knowledge in biochemistry and cell culture. 
  • Good Communication and Writing Skills in English Language.

DC4

Université Paris Cité

Project title:

Electrochemical Exploration of Soft Matter Interfaces: Nanoscale Probing and Advanced Microscopy

Supervisor:


Project description

Objective:

Electrochemistry is a field that enables the probing and manipulation of soft matter, which is becoming increasingly important in the context of societal electrification. Examples include the production of green hydrogen and the utilization of water in salt electrolytes for energy storage or conversion devices, both of which involve understanding liquid/liquid or solid/liquid/gas interfaces influenced by electrochemical processes.
In this study, and within the context of soft matter for energy applications, we will utilize nanoscale electrochemical methodologies to investigate soft matter at the level of individual micro/nano objects. However, to unveil the complexity of these objects, such as the growth, motion, or deformation of liquid nanolayers, drops, bubbles, or polymer microgels, nanoscale electrochemistry techniques need to be integrated with complementary in situ information. We will leverage our platform of refractive-index-based optical microscopies, including interference reflection and interference scattering (iSCAT) microscopies, to image and quantify in situ or operando the physical and chemical phenomena associated with the electrochemical triggering or interrogation of soft matter objects at high throughput.

Qualifications:

A master’s degree (or equivalent) in a relevant field.

DC5

Johannes Kepler University

Project title:

Broadband nano-electrical spectroscopy for soft matter

Supervisor:


Project description

Objective:

The objective of this project is the implementation and optimization of a new broadband electrostatic force microscope for fast acquisition of electrical properties (permittivity and loss/ conductivity) in a wide frequency range from kHz to GHz. The aim is to acquire full electrical spectra of the sample under study during one AFM image, which requires synchronized high-speed data acquisition and storage while standard imaging. In an initial step the system will be optimized for operation in air environment. In a second step also in-liquid measurement will be implemented.

Qualifications:

A master’s degree (or equivalent) in a relevant field.

DC9

Heidelberg University / Max Planck Institute

Project title:

Untethered micro- and nanorobotic biotools

Supervisor:


Project description

Objective:

One objective of our research is to develop untethered (wireless) tools with which one can penetrate tissue and achieve targeted delivery of therapeutics and genetic material. The aim of this project is to develop hybrid micro- nano-robotic systems that are controlled by magnetic, acoustic, or chemical fields and that can address one or several of the following challenges:

  • Generate forces and penetrate tissues effectively.
  • Function as a sensor to probe cells, and the structure of tissues.
  • Implement the ability to sense chemical gradients and to autonomously navigate.
  • Achieve the assembly of cellular systems into ‘living machines’.
  • Aid the development of minimally-invasive surgical tools.

Our research typically starts with a physical effect that we study to then develop tools and experimental systems at the micro- and nano-scale.

Qualifications:

We are looking for a motivated candidate with a master’s degree (or an equivalent university degree) in the fields of Physics, Applied Physics, Engineering, Nanoscience, Materials Science or a related discipline. A willingness to undertake high-risk high-gain experimental research is essential, as is a fascination and interest in experimental research coupled with a curiosity in biophysical questions. Previous experience with experimental research is beneficial.

DC11

University of Warwick

Project title:

Mobile soft nanorobotics for nanomedicines

Supervisor:


Project description

Objective:

The objective of this DC project is to develop nanopipette delivery-based nanoparticle (nanorobot) therapy for single cells. The multifunctional nanopipette technique will be developed for nanoparticle release and manipulation within single cell. Multiphysical field finite element modelling and molecular dynamics simulation methods will be utilised to explore the intrinsic mechanisms acting within the nanopipette delivery and manipulation. The intelligent vision-based trajectory tracking will be established and experimentally validated.

Expected Results:
Development of multifunctional nanopipette suitable for nanoparticle delivery and manipulation within single cell. In-depth understanding of the intrinsic mechanisms underpinning the nanopipette delivery. Enhanced nanoparticle tracking techniques for the nanopipette manipulation. Precise nanomedicine for single cells.

Qualifications:

Applicants should have relevant qualifications within Nanorobotics, Applied Physics, Nanoscience, Materials Science or similar.
Previous experience with scanning probe microscopy is highly welcomed but not a prerequisite. Expertise in electrochemistry, finite element modelling, molecular dynamics simulation and machine learning are also of value.

DC13

University of Warwick

Project title:

Autonomous functional nanopipettes: a new imaging platform and the intelligent synthesis of soft nanobots

Supervisor:


Project description

Objective:

This study focuses on the development of nanopipettes for 2 major applications: (1) we shall make an intelligent nanopipette probe imaging platform to facilitate autonomous imaging and manipulation of cells and soft matter. The instrument will integrate an x,y,z piezo positioning system with an inverted microscope that will read optical images to identify regions of interest for investigation or intervention by the nanopipette. The instrument will be based on an existing LabVIEW FPGA architecture and incorporate machine learning protocols. It will be applicable to SICM and other forms of nanopipette probe microscopy (scanning electrochemical cell microscopy and variants thereof); (2) the use of nanopipettes and nanopore arrays for the synthesis of soft nanobots, through the development of a platform that makes use of nanoscale electric fields for mixing reagents and with active (feedback) control in the synthesis process.

Expected Results:
1) An innovative platform for functional nanopipette imaging that will have wide applicability for which the software will be made freely available to the academic community as part of the Warwick Electrochemical-Scanned Probe Microscope; 2) A synthesis platform that will enable the creation and analysis of tailored soft materials with built in functionality for applications as nanobots.

Qualifications:

Applicants should have relevant qualifications within Electrochemistry, Applied Physics, Nanoscience, Materials Science or similar.
Previous experience with scanning electrochemical microscopy is highly welcomed but not a prerequisite. Expertise in NI Labview programming, finite element modelling, and artificial intelligence for image processing is also of value.


Applications to the positions DC6, DC10 and DC12 must be submitted directly to the hosting institution graduate school. A link is provided under the respective project descriptions.

DC6

Norwegian University of Science and Technology

Project title:

Fundamentals of liquid – liquid biopolymer phase separation

Supervisor:

Deadline:

2024.03.31


Project description

Objective:

The objective of the DC project is to investigate fundamental, nanoscale properties of multivalent biopolymer partners undergoing liquid-liquid phase separation (LLPS), an emerging mechanism for membrane-less biological organization and cascading mesoscale structure formation. The project involves development of label-free quantitative imaging procedures, and combine these with other advanced fluorescence based optical imaging and force spectroscopy to elucidate impact of molecular and environmental parameters on LLPS.

Qualifications:

A master’s degree (or equivalent) in a relevant field.

DC10

Karlsruhe Institute of Technology

Project title:

Digitalization of Biomaterial Research via Deep Learning Approaches

Supervisor:

Deadline:

2024.04.30


Project description

Objective:

  • Development of a deep learning algorithm assisted platform for material research
  • Fast screening of biomolecular interactions
  • Fast screening of biomaterial performance
  • Develop mathematical relation between biomaterial binding type and surface properties

Expected Results:

  • Deep learning-based analysis of fingerprint-like drying droplet patterns by training of convolutional neural networks (CNN)
  • Preparation of model biomaterial surfaces using systematic variation of surface chemistry via vapour deposition polymerization of functionalized poly-p-xylylenes
  • CNN extracts cellular localization patterns in polarized light microscopy (PLM) images via end-to-end hierarchical feature representations
  • Screening of biomolecular interactions (e.g. DNA-protein or drug interactions)
    • classify biomolecule interaction levels to predict the optimal ratio for binding between two particular species
    • optimize and re-define the pretrained CNN to achieve more data from the images obtained by PLM imaging method
    • Scalable and accurate detection schemes for stratification of conformational and structural biomolecule alterations
  • Screening of biomaterial performance via investigation of biomolecule-surface interaction via droplet patterns
    • classify biomolecule interaction to predict biomaterial binding/adhesion properties
  • complementary characterization via elaborate techniques (e.g. Circular Dichroism, Time-of-Flight Secondary Ion Mass Spectrometry, Imaging Ellipsometry)
  • improve model management to ensure reproducibility by avoiding information loss

Qualifications:

  • Master or equivalent in chemistry, chemical engineering or materials science.
  • Profound knowledge in biochemistry, polymer chemistry and physical chemistry
  • Practical experience in software programming and/or scripting
  • Excellent communication and writing skills in English Language

DC12

University of Leeds

Project title:

Video rate super-resolution structured illumination microscopy (SR SIM)

Supervisor:

Deadline:

2024.03.18


Project description

Objective:

The objective of this DC project is to establish a high speed SR SIM and expand it for multi-color and video rate super-resolved imaging of cells. Using spot-scanning SR SIM with multiple foci produced with improved microlens arrays (e.g. metasurfaces) and scanned across the sample with galvanometric mirrors, the improved imaging resolution can reach up to 80 nm and more than 230 frames for 512×512 pixel region of interest. Based on a Windows+RTX architecture, a raw data acquisition, and CMOS camera control, and on-the-fly 3D image reconstruction and display system will be established and validated based on traditional Wiener deconvolution method. The iterative (Hessian matrix based) deconvolution approach will be utilized obtain super-resolved 3D images during the post-processing steps.

Qualifications:

We are looking for an enthusiastic student with a master’s degree (or equivalent) in fields such as engineering or physics, with an understanding of optical microscopy.

The following positions have already been filled. Please do not apply for these positions:

DC7

Aarhus University / Dansk Fundamental Metrologi

Project title:

Fluidic force microscopy for soft matter mechanics

Supervisor:


Position already filled.

Objective:

Mechanobiology is the study of how cells sense and respond to mechanical signals, and it is an emerging multidisciplinary field that combines biophysics, engineering, medicine, and biology. The aim of this project is to establish a soft matter metrology framework and develop new methodologies based on atomic force microscopy (AFM) and Fluidic Force Microscopy (FluidFM) for the quantitative analysis of soft matter such as proteins, mammalian cells, and to apply these techniques for identifying how mechanical cues contribute to development, differentiation, physiology and disease.
Potential research directions include: development of hybrid techniques implementing AFM and FluidFM with optical and electromechanical systems; standardisation of nanomechanics, single-molecule and single-cell force spectroscopy; studying the interaction mechanisms for example between virus and cell.
The project will be run in collaboration with the Danish National Metrology Institute, where the candidate will perform experiments and work on a user-case in collaboration with a corporate partner.

Qualifications:

A master’s degree (or equivalent) in nanoscience, physics, biology or similar of relevance to the project.
A good command of English (oral and written).
A research-oriented attitude and interest in joining an international environment.

DC8

Stockholm University

Project title:

Development of electron diffraction-based techniques for applications to soft matter and nanofibres

Supervisor:


Position already filled

Objective:

Biopolymer nanofibres play an important role in the construction of biological systems, where they contribute with mechanical and other physical properties. Fibres can be constructed from proteins, as in amyloids, or polysaccharides, such as cellulose and chitin. Their properties will be defined by the structures ranging from the mesoscale to the atomic level and it is hence of utmost importance to develop techniques to study their structures. Electron microscopy and electron diffraction have evolved over the last years into a new era. Cryo-EM was awarded the Nobel Prize in 2017 for studies of protein structures and methods for 3D electron diffraction have pushed the limits of atomic structure determination into the nanoworld.

In this project, we will utilize emerging opportunities for the rapid collection of electron diffraction data using transmission electron microscopy, called scanning electron diffraction and three-dimensional electron diffraction. These techniques are opening up for studies of electron beam-sensitive specimens, such as biopolymers and proteins, at the nanoscale.

The project will focus on the development of protocols for data collection and data analysis as well as the interpretation and utilization of the resulting data to understand the atomic arrangement and how this knowledge can aid the understanding of the properties of the biomaterials and how they can be used in the development of devices. The technique will generate large amounts of data and hence protocols for the analysis of big data will be necessary.

Qualifications:

We are looking for an ambitious, curious and self-motivated student. The work will be conducted in close collaboration with leading groups internationally and hence a successful candidate should have good collaborative skills. The candidate should have a master’s degree (or similar) in Chemistry, Biology, Physics or similar subjects. Knowledge in any of the areas of electron microscopy, crystallography, biomacromolecules and/or scientific programming will be an asset but is not necessary.

DC14

Eidgenössische Technische Hochschule Zürich

Project title:

Mechanics of the actin and microtubule cytoskeletons

Supervisor:


Position already filled.

Objective:

The objective of the DC project is quantification of how forces are transmitted to and by the cytoskeleton relying on FluidFM (an AFM-based pipette) for the mechanical-electrical-chemical stimulus combined with forefront fluorescent techniques for the read-out. Cytoplasm consists of a water-containing matrix formed by a cytoskeletal network of interconnected protein fibers constituting the force-generating cell machinery, finally affecting cell shape, motility, division, and proliferation. Cytoskeleton behaviour will be thus modelled from the perspective of hydrogels, a synthetic or natural water-swollen polymeric network containing chemical or physical crosslinks.

Qualifications:

Applicants should have relevant qualifications within Applied Physics, Nanoscience, Material Science or Biomedical Engineering.
AFM experience during the MSc thesis is of advantage.

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